Retrieve bioactivity data from DTXSID or AEID batch — get_bioactivity_details_batch • ctxR

Retrieve bioactivity data from DTXSID or AEID batch

Usage

get_bioactivity_details_batch(
  DTXSID = NULL,
  AEID = NULL,
  SPID = NULL,
  m4id = NULL,
  API_key = NULL,
  Server = NULL,
  rate_limit = 0L,
  verbose = FALSE
)

Arguments

DTXSID: A list of chemical identifier DTXSIDs.
AEID: A list of assay endpoint identifiers AEIDs.
SPID: A list of ChemSpider chemical inputs
m4id: A list of chemical identifier m4ids
API_key: The user-specific API key.
Server: The root address for the API endpoint
rate_limit: Number of seconds to wait between each request
verbose: A logical indicating if some “progress report” should be given.

Value

A named list of data.frames containing bioactivity information for the chemicals with DTXSID or assays with AEID matching the input parameter.

Examples

if (FALSE) { # has_ctx_key() & is.na(ctx_key() == "FAKE_KEY")
# Pull bioactivity details for multiple chemicals
dtxsid <- c('DTXSID7020182', 'DTXSID2021315')
batch_bioactivity <- get_bioactivity_details_batch(DTXSID = dtxsid)
# Pull bioactivity details for multiple assays
batch_bioactivity <- get_bioactivity_details_batch(AEID = c(159, 160))
}