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Create A Three-Characteristic Depth Profile

Source: R/DepthProfile.R
TADA_DepthProfilePlot.Rd

Create A Three-Characteristic Depth Profile

Usage

TADA_DepthProfilePlot(
  .data,
  groups = NULL,
  location = NULL,
  activity_date = NULL,
  depthcat = TRUE,
  surfacevalue = 2,
  bottomvalue = 2,
  unit = "m"
)

Arguments

.data

TADA dataframe containing the data downloaded from the WQP, where each row represents a unique data record. TADA_FlagDepthCategory has been run as dataframe must include the columns TADA.DepthCategory.Flag, TADA.ResultDepthHeightMeasure.MeasureUnitCode, TADA.ActivityDepthHeightMeasure.MeasureUnitCode, and TADA.ActivityDepthHeightMeasure.MeasureValue. Units for all depth fields must be the same. This can be accomplished using TADA_AutoClean() or TADA_ConvertDepthUnits.

groups

A vector of two identifiers from the TADA.ComparableDataIdentifier column. For example, the groups could be 'DISSOLVED OXYGEN (DO)_NA_NA_UG/L' and 'PH_NA_NA_NA'. These groups will be specific to your dataframe. The TADA_IDDepthProfiles can be used to identify available groups.

location

A single MonitoringLocationIdentifier to plot the depth profile. A MonitoringLocationIdentifier must be entered or an error will be returned and no depth profile will be created.

activity_date

The date the depth profile results were collected.

depthcat

Boolean argument indicating whether delineation between depth categories should be shown on the depth profile figure. depthcat = TRUE is the default and displays solid black lines to delineate between surface, middle, and bottom samples and labels each section of the plot.

surfacevalue

numeric argument. The user enters how many meters from the surface should be included in the "Surface" category. Default is surfacevalue = 2.

bottomvalue

numeric argument. The user enters how many meters from the bottom should be included in the "Bottom" category. Default is bottomvalue = 2.

unit

Character argument. The enters either "m" or "ft" to specify which depth units should be used for the plot. Default is "m".

Value

A depth profile plot displaying up to three parameters for a single MonitoringLocationIdentifier. Displaying depth categories is optional with the depthcat argument.

Examples

# Load example dataframe:
data(Data_6Tribes_5y_Harmonized)
# Create a depth profile figure with three parameters for a single monitoring location and date
TADA_DepthProfilePlot(Data_6Tribes_5y_Harmonized,
  groups = c("TEMPERATURE_NA_NA_DEG C", "PH_NA_NA_STD UNITS", "DEPTH, SECCHI DISK DEPTH_NA_NA_M"),
  location = "REDLAKE_WQX-ANKE",
  activity_date = "2018-10-04"
)
#> [1] "TADA_DepthProfilePlot: Running TADA_FlagDepthCategory function to add required columns to dataframe"
#> [1] "TADA_FlagDepthCategory: checking data set for depth values. 56987 results have depth values available."
#> [1] "TADA_FlagDepthCategory: assigning depth categories."
#> [1] "TADA_FlagDepthCategory: Grouping results by MonitoringLocationIdentifier, OrganizationIdentifier, CharacteristicName, and ActivityStartDate for aggregation for entire water column."
#> [1] "TADA_FlagDepthCategory: No aggregation performed."
#> [1] "TADA_DepthProfilePlot: Depth unit in data set matches depth unit specified by user for plot. No conversion necessary."
#> [1] "TADA_DepthProfilePlot: Identifying available depth profile data."
#> [1] "TADA_DepthProfilePlot: Any results for DEPTH, SECCHI DISK DEPTH, DEPTH, SECCHI DISK DEPTH (CHOICE LIST), DEPTH, SECCHI DISK DEPTH REAPPEARS, DEPTH, DATA-LOGGER (NON-PORTED), DEPTH, DATA-LOGGER (PORTED), RBP STREAM DEPTH - RIFFLE, RBP STREAM DEPTH - RUN, THALWEG DEPTH match the depth unit selected for the figure."
#> [1] "TADA_DepthProfilePlot: Adding surface delination to figure."
#> [1] "TADA_DepthProfilePlot: Adding bottom delination to figure."



# Load example dataframe:
data(Data_6Tribes_5y_Harmonized)
# Create a depth profile figure with two parameters for a single monitoring location and date without displaying depth categories
TADA_DepthProfilePlot(Data_6Tribes_5y_Harmonized,
  groups = c("CONDUCTIVITY_NA_NA_US/CM", "DISSOLVED OXYGEN (DO)_NA_NA_MG/L"),
  location = "REDLAKE_WQX-JOHN",
  activity_date = "2018-07-31",
  depthcat = FALSE
)
#> [1] "TADA_DepthProfilePlot: Running TADA_FlagDepthCategory function to add required columns to dataframe"
#> [1] "TADA_FlagDepthCategory: checking data set for depth values. 56987 results have depth values available."
#> [1] "TADA_FlagDepthCategory: assigning depth categories."
#> [1] "TADA_FlagDepthCategory: Grouping results by MonitoringLocationIdentifier, OrganizationIdentifier, CharacteristicName, and ActivityStartDate for aggregation for entire water column."
#> [1] "TADA_FlagDepthCategory: No aggregation performed."
#> [1] "TADA_DepthProfilePlot: Depth unit in data set matches depth unit specified by user for plot. No conversion necessary."
#> [1] "TADA_DepthProfilePlot: Identifying available depth profile data."