Package index • EPATADA

All functions

Data_6Tribes_5y: Data_6Tribes_5y

Data_6Tribes_5y_Harmonized: Data_6Tribes_5y_Harmonized

Data_HUC8_02070004_Mod1Output: Data_HUC8_02070004_Mod1Output

Data_MT.UseAURef_Water: Data_MT.UseAURef_Water

Data_MT_AUMLRef: Data_MT_AUMLRef

Data_MT_MissoulaCounty: Data_MT_MissoulaCounty

Data_MT_UseAURef: Data_MT_UseAURef

Data_Nutrients_UT: Data_Nutrients_UT

Data_R5_TADAPackageDemo: Data_R5_TADAPackageDemo

TADA_AggregateMeasurements(): Aggregate multiple result values to a min, max, or mean

TADA_AnalysisDataFilter(): TADA_AnalysisDataFilter

TADA_AutoClean(): TADA_AutoClean

TADA_BigDataHelper(): Assist with large WQP data pulls using dataRetrieval

TADA_Boxplot(): Create Boxplot(s)

TADA_CalculateTotalNP(): Calculate Total Nitrogen and Phosphorus

TADA_CharStringRemoveNA(): Remove NAs in Strings for Figure Titles and Axis Labels

TADA_CheckColumns(): Check Columns

TADA_CheckRequiredFields(): TADA Required Fields Check

TADA_CheckType(): Check Type

TADA_ColorPalette(): Create Color Palette For Use in Graphs and Maps

TADA_ConvertDepthUnits(): Convert Depth Units

TADA_ConvertResultUnits(): Transform Units to TADA Target Units, WQX Target Units or User Specified Units

TADA_ConvertSpecialChars(): TADA_ConvertSpecialChars

TADA_CreateATTAINSAUMLCrosswalk(): TADA_CreateATTAINSAUMLCrosswalk

TADA_CreateAUMLCrosswalk(): TADA_CreateAUMLCrosswalk

TADA_CreateCSV(): Create and download .csv

TADA_CreateComparableID(): Create TADA.ComparableDataIdentifier Column

TADA_CreateDateTime(): Create ActivityStartDateTime column

TADA_CreateMLSummaryRef(): Review and Apply Any Site-specific Criteria to Monitoring Location Sites or Assessment Units

TADA_CreatePairRef(): Create Reference Data Frame to Pair Characteristic Results For Use in Numeric Criteria Equations (UNDER ACTIVE DEVELOPMENT)

TADA_CreateParamRef(): Create or Update ATTAINS, TADA/WQP/WQX, and EPA Criteria Search Tool (CST) Parameter Name Crosswalk

TADA_CreateUnitRef(): Generate A DataFrame of Units and Target by Characteristic Name

TADA_CreateUseAURef(): ATTAINS Assessment Unit and Use Name Crosswalk

TADA_CreateUseParamRef(): Create or Update ATTAINS Parameter and Use crosswalk

TADA_CreateWaterUseRef(): Helper Function to Apply Uses to Unassigned Assessment Units by Water Type

TADA_CriteriaDataDictionary(): Data Dictionary for Criteria and Methodology

TADA_DataRetrieval(): Generate TADA-compatible dataframe from WQP Data

TADA_DecimalPlaces(): Calculate Decimal Places

TADA_DefineCriteriaMethodology(): Criteria and Methodology Template

TADA_DepthProfilePlot(): Create A Three-Characteristic Depth Profile

TADA_FieldCounts(): Unique Field Values Table

TADA_FieldValuesPie(): Field Values Pie Chart

TADA_FieldValuesTable(): Field Values Summary Table

TADA_FindNearbySites(): Identify and group nearby monitoring locations (UNDER ACTIVE DEVELOPMENT)

TADA_FindPotentialDuplicatesMultipleOrgs(): Identify Potentially Duplicated Data Uploads by Multiple Organizations

TADA_FindPotentialDuplicatesSingleOrg(): Identify Potentially Duplicated Data Uploads by a Single Organization

TADA_FindQAPPApproval(): Check data for an approved QAPP

TADA_FindQAPPDoc(): Check if an approved QAPP document URL is provided

TADA_FindQCActivities(): Check for Quality Control Samples

TADA_FlagAboveThreshold(): Check Result Value Against WQX Upper Threshold

TADA_FlagBelowThreshold(): Check Result Value Against WQX Lower Threshold

TADA_FlagContinuousData(): Flag Continuous Data

TADA_FlagCoordinates(): Suspect coordinates

TADA_FlagDepthCategory(): TADA_FlagDepthCategory

TADA_FlagFraction(): Check Sample Fraction Validity

TADA_FlagMeasureQualifierCode(): Check for results with suspect result Measure Qualifier Codes

TADA_FlagMethod(): Check for Suspect Analytical Methods

TADA_FlagResultUnit(): Check Result Unit Validity

TADA_FlagSpeciation(): Check Method Speciation Validity

TADA_FlaggedSitesMap(): Create Flagged Sites Map

TADA_FormatDelimitedString(): Convert a delimited string to the format used by WQX 3.0 profiles for one-to-manys

TADA_GetATTAINSAUMLCrosswalk(): Get Monitoring Location Identifier and Assessment Unit Identifier Crosswalk from ATTAINS

TADA_GetATTAINSByAUID(): TADA_GetATTAINSByAUID

TADA_GetATTAINSOrgIDsRef(): ATTAINS Organization Identifier Reference Table

TADA_GetATTAINSParamUseOrgRef(): ATTAINS Parameter and Use Name by Organization Reference Key

TADA_GetATTAINSParameterWQPCharRef(): ATTAINS Parameter and WQP Characteristic Exact Match Reference Table

TADA_GetActivityTypeRef(): Update Activity Type Reference Table

TADA_GetCharacteristicRef(): Update Characteristic Reference Table

TADA_GetDetCondRef(): Update Result Detection Condition Reference Table

TADA_GetDetLimitRef(): Update Detection Quantitation Limit Type Reference Table

TADA_GetEPACSTRef(): Get EPA Criteria Search Tool (CST) Data

TADA_GetMeasureQualifierCodeRef(): Update result Measure Qualifier Code Reference Table

TADA_GetMeasureUnitRef(): Update Measure Unit Reference Table

TADA_GetMonLocTypeRef(): Update Monitoring Location Type Name Reference Table

TADA_GetNutrientSummationRef(): Nutrient Summation Reference Key

TADA_GetSynonymRef(): Generate Unique Synonym Reference Table

TADA_GetTemplate(): Get TADA Template

TADA_GetUSGSSynonymRef(): Nutrient Summation Reference Key

TADA_GetUniqueNearbySites(): Get grouped monitoring stations that are near each other

TADA_GetWQPOrgProviderRef(): Get Organization and Provider Reference Table

TADA_GetWQXCharValRef(): WQX QAQC Characteristic Validation Reference Table

TADA_GroupedScatterplot(): Create Scatterplot(s) for Each TADA.ComparableDataIdentifier with Multiple (Up to 4) Groupings by an Additional Column

TADA_HarmonizeSynonyms(): Harmonize Synonyms

TADA_Histogram(): Create Histogram(s)

TADA_IDCensoredData(): Prepare Censored Data

TADA_IDDepthProfiles(): TADA_IDDepthProfiles

TADA_JoinWQPProfiles(): Join WQP Profiles

TADA_MakeSpatial(): TADA_MakeSpatial

TADA_NearbySitesMap(): Create Nearby Sites Map

TADA_OrderCols(): Order TADA Columns and Rows

TADA_OverviewMap(): Create Overview Map

TADA_PairForCriteriaCalc(): Pair Results for Numeric Criteria Calculation (UNDER ACTIVE DEVELOPMENT)

TADA_PairReplicates(): Pair Replicates with Original Samples

TADA_RandomTestingData(): Generate a random WQP dataset

TADA_ReadWQPWebServices(): Read in WQP data using the Water Quality Portal (WQP) web services

TADA_RenametoLegacy(): TADA_RenametoLegacy

TADA_RetainRequired(): TADA_RetainRequired

TADA_RunKeyFlagFunctions(): Run key flagging functions

TADA_Scatterplot(): Create Scatterplot(s)

TADA_SimpleCensoredMethods(): Simple Tools for Censored Data Handling

TADA_Stats(): Generate Statistics Table

TADA_SubstituteDeprecatedChars(): Substitute Preferred Characteristic Name for Deprecated Names

TADA_SummarizeColumn(): Summarize data downloaded by specified column

TADA_TableExport(): Create downloadable table

TADA_TribalOptions(): Access options available for querying tribal spatial data with TADA_DataRetrieval().

TADA_TwoCharacteristicScatterplot(): Create A Two-Characteristic Scatterplot

TADA_UniqueCharUnitSpeciation(): Create Characteristic/MeasureUnitCode/MethodSpeciation Ref

TADA_UpdateATTAINSAUMLCrosswalk(): Update Monitoring Location Identifier and Assessment Unit Identifier Crosswalk in ATTAINS

TADA_UpdateTribalLayers(): Function to update tribal layer shapefiles. Shapefiles are stored in inst/extdata. Existing shapefiles with the same name will be deleted first if they exist.

TADA_ViewATTAINS(): TADA_ViewATTAINS

TADA_ViewColorPalette(): View TADA Color Palette

TADA_addPoints(): Add points from an ArcGIS feature layer to a leaflet map

TADA_addPolys(): Add polygons from an ArcGIS feature layer to a leaflet map

TADA_getNWIS(): Retrieve and tidy daily values from NWIS (DRAFT - UNDER ACTIVE DEVELOPMENT)

TADA_listNWIS(): TADA_listNWIS (DRAFT - UNDER ACTIVE DEVELOPMENT)

ask_user(): Ask user to approve WQP downloads

checkColName(): checkColNames

.TADA_UpdateExampleData(): Update Example Data for EPATADA Package (Internal)

.TADA_UpdateRefFiles(): Update All TADA Reference Files (Internal)

fetchATTAINS(): fetchATTAINS

fetchNHD(): fetchNHD

getBboxJson(): Get bounding box JSON

getFeatureLayer(): Retrieve feature layer from ArcGIS REST service getFeatureLayer is used by writeLayer to write feature layers to local files

getLayer(): Get a shapefile from a local folder, optionally crop it by a bounding box, and return it as a sf object getLayer is used within TADA_addPolys and TADA_addPoints

getPopup(): Get text for tribal marker popup getPopup is used within TADA_addPolys and TADA_addPoints

pchIcons(): Create icon(s) to be used to represent points on a map feature layer pchIcons is used within TADA_addPoints

quiet(): Silence Print Messages from Code Execution

renameATTAINSCols(): renameATTAINSCols

writeLayer(): Download a shapefile from an API and save it to a local folder, overwriting existing file if it exists writeLayer is used by TADA_UpdateTribalLayers in TADAGeospatialRefLayers.R.